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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015902138.1_cds_XP_016452143.1_46412
CDS Infomation

[gene=LOC107776743] [db_xref=GeneID:107776743] [protein=delta-1-pyrroline-5-carboxylate synthase isoform X2] [protein_id=XP_016452143.1] [location=join(5885..5944,6598..6669,7033..7136,7831..7933,8062..8223,9471..9748,19860..20010,20093..20257,20345..20422,20783..20872,21121..21207,21317..21403,21523..21619,21725..21828,21944..22019,22452..22602,22799..22806,22995..23061,23148..23208)] [gbkey=CDS]
Sequence

ATGGAGACAGCTGATTCTACTCGGACATTTGTCAGGAACGTGAAACGAGTAATTGTCAAG
GTTGGGACTGCAGTTGTGACACGGACTGATGGAAGATTAGCACTTGGAAGATTGGGAGCG
CTCTGTGAGCAGATTCAGGAGCTTAACTCGCAAGGCTATGAAGTTATTTTGGTGACTTCA
GGTGCTGTAGGTGTTGGTCGTCAGCGGCTTAGATATAGGAAGTTGCTGAATAGCAGTTTT
CTTGATCTTCAAAAGCCCCAAAGTGAGCTTGATGGCAAAGCTTGTGCTGCTGTGGGCCAG
AATGGCCTTATGGCTCTGTATGATTCATTGTTCAGTCAGTTGGATATGACTTCAGCTCAG
CTTTTGGTGACTGATAATGACTTTAGGGATCCAGATTTTAGGAGACAACTCAATGACACA
GTAAACTCTTTGCTGTCTCTTAAAGTTATACCTATATTTAATGAGAATGACGCTATCAGT
ACGCGGAAAGCTCCTTATGAGGACTCTTCTGGAATATTTTGGGACAATGACAGTTTGGCA
GCTCTACTAGCTTTGGAATTAAAAGCTGATCTTCTAGTTCTGTTGAGTGACGTAGAGGGT
CTTTATAGTGGCCCTCCCCGTGATCCAGATTCGAAGTTAATTCACACATACATTAAGGAG
AGGCATGAGACAGTGATTACTTTTGGAGACAAGTCCAGGGTGGGAAGAGGGGGCATGACT
GCCAAAGTAAAAGCTGCTATGTATGCTGCTTATGCTGGCATTCCTGTTGTCATAACCAGT
GGCTTCGCTGTCGATAACATCATTAAAGTGCTACATGGGGAATGTATCGGCACCCTCTTT
CATCGTGATGCCAATAAATGGGCTTCAACTGGAGAGATAGGTGCTCGTGAGATGGCAGTT
GCCGCAAGGGAATGTTCCAGGCGGCTTCAGGCACTTTCTTCCCAAGAAAGGAGTAAAATT
TTGCAGGATATGGCTGATGCATTGGAAGCAAATGAAAAGGCAATCCTTGCTGAGAATGAA
GCTGATGTGGTTGCTGCTCAACAGGCTGGATATGAGAAGTCTTTGATATCTCGGCTGGCA
TTAAAGCCAGGAAAAATTTCTAATCTTGCAAATTCAGTTCGTGTGCTTGCTAACATGGAT
GAGCCCATTGGTCGCATTTTAAAGAGAACGGAGGTTGCTGATGGATTCATCTTGGAGAAA
TCATCATCTCCATTAGGCGTTCTATTGATTATTTTTGAGTCACGACCGGATGCACTTGTA
CAGATAGCTTCTCTAGCAGTCCGAAGTGGGAACGGCCTCTTGTTGAAAGGAGGAAAGGAG
GCCAAAAGATCAAACGCTATCTTACACAAGGTGATTACCTCAGCGATTCCTGGAACTGTT
GGTGAAAGGCTTATTGGACTAGTGACTTCTAGAGAAGAGATCCCTGAATTGCTCAAGCAT
GATGATGTGATTGATCTTGTTATTCCAAGAGGTAGCAATAAACTTGTTTCTCAAATTAAG
GCATCAACAAAAATTCCTGTTCTTGGCCATGCTGATGGAATTTGCCATGTTTATGTTGAC
AAGTCTGCTGACATGGATATGGCAAAGCGGGTTGTTGTGGATGCAAAAACGGATTATCCT
GCAGCCTGTAATGCGATGGAAACACTTCTTGTGCATAAGGATTTGGCACAAAATGGAGGT
CTTAATGACCTGATTGTGGAACTTCAAACAAAAGGGGTTTCTTTATATGGTGGACCAAAA
GCAAGCTCCCTGCTCAAGATTCCAGAGGCGCGTACTTTTCATCACGAATATGGTTCACTG
GCTTGCACTGTGGAAGTTGTTGAAGATGTATATGCTGCAATAGATCATATACATCAGCAT
GGAAGGTTGACAGTGCTGCTGTATTTCATAATGCAAGCACAAGATTTAGTGATGGGTTCC
GCTTTGGACTGGGTGCAGAGGTTGGGATTAGCACAAGTCGTATTCATGCTCGTGGCCCAG
TTGGAGTTGAAGGGTTGCTAA

Peptide Sequence

PEP ID

XP_016452143.1
PEP Infomation

PREDICTED: delta-1-pyrroline-5-carboxylate synthase isoform X2 [Nicotiana tabacum]
Sequence

METADSTRTFVRNVKRVIVKVGTAVVTRTDGRLALGRLGALCEQIQELNSQGYEVILVTS
GAVGVGRQRLRYRKLLNSSFLDLQKPQSELDGKACAAVGQNGLMALYDSLFSQLDMTSAQ
LLVTDNDFRDPDFRRQLNDTVNSLLSLKVIPIFNENDAISTRKAPYEDSSGIFWDNDSLA
ALLALELKADLLVLLSDVEGLYSGPPRDPDSKLIHTYIKERHETVITFGDKSRVGRGGMT
AKVKAAMYAAYAGIPVVITSGFAVDNIIKVLHGECIGTLFHRDANKWASTGEIGAREMAV
AARECSRRLQALSSQERSKILQDMADALEANEKAILAENEADVVAAQQAGYEKSLISRLA
LKPGKISNLANSVRVLANMDEPIGRILKRTEVADGFILEKSSSPLGVLLIIFESRPDALV
QIASLAVRSGNGLLLKGGKEAKRSNAILHKVITSAIPGTVGERLIGLVTSREEIPELLKH
DDVIDLVIPRGSNKLVSQIKASTKIPVLGHADGICHVYVDKSADMDMAKRVVVDAKTDYP
AACNAMETLLVHKDLAQNGGLNDLIVELQTKGVSLYGGPKASSLLKIPEARTFHHEYGSL
ACTVEVVEDVYAAIDHIHQHGRLTVLLYFIMQAQDLVMGSALDWVQRLGLAQVVFMLVAQ
LELKGC

Transcript Sequence

Gene sequence data has not been registered.